PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054953.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 260aa MW: 28843.6 Da PI: 8.3045

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054953.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.2e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rFveav+qLGG++kAtPk+il++m+++gLtl+h+kSHLQkYRl EcC054953.30 46 KPRLKWTTDLHKRFVEAVNQLGGADKATPKSILKAMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.436	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-21	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MHNHSLYGGK NFHPSSRMSI LSERHLLLQA ANGPGDSGLI LSTDAKPRLK WTTDLHKRFV 60 EAVNQLGGAD KATPKSILKA MGIPGLTLYH LKSHLQKYRL SKNLHGQATN GTNRAVAEVK 120 VSEANGPHLN NSSIGIQVNK NLHISEAFQV QIEVQRRLHE QMEAQRHMQL HIEAQGKYLQ 180 AVLEKAQETL GRHDSGSVGL EAAKYQLSEL VSKVSADSLS STFPDVVDIH LHQMQMNQNT 240 DGSLDSCLTC ERPQKDREED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054431.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	6e-52	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A059DGG5	0.0	A0A059DGG5_EUCGR; Uncharacterized protein
STRING	GLYMA13G39290.2	1e-118	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-108	G2-like family protein